1 Take home massage

• Peptide Sequences Identified in total: 35921

• Avearge ms/ms identification rate(%): 20.9

• Average mass deviation(ppm): 0.57997

2 MSMS id rate by raw file

3 Peptide sequence id by Experiment

4 peptide sequence id by raw file

The result might look the same if the experimtal design is set to leave each rawfile as an experiment

5 Average performance

check the averaged performance from all raw files: